We had our baptism for baby #2 at the Mall of Asia Church (Shrine of Jesus, the Way, the Truth, and the Life). It's one of the cleanest, most spacious, and most picturesque Baptistries I've been to. Application is easy and smooth, too. Requirements are not hard to accomplish since they don't do pre-seminars for parents and ninongs/ninangs.
Try St. Alphonsus Church in Magallanes Village, Makati and St. Andrew the Apostle